Screen for IDH1, IDH2, IDH3, D2HGDH and L2HGDH Mutations in Glioblastoma

Isocitrate dehydrogenases (IDHs) catalyse oxidative decarboxylation of isocitrate to α-ketoglutarate (α-KG). IDH1 functions in the cytosol and peroxisomes, whereas IDH2 and IDH3 are both localized in the mitochondria. Heterozygous somatic mutations in IDH1 occur at codon 132 in 70% of grade II–III gliomas and secondary glioblastomas (GBMs), and in 5% of primary GBMs. Mutations in IDH2 at codon 172 are present in grade II–III gliomas at a low frequency. IDH1 and IDH2 mutations cause both loss of normal enzyme function and gain-of-function, causing reduction of α-KG to D-2-hydroxyglutarate (D-2HG) which accumulates. Excess hydroxyglutarate (2HG) can also be caused by germline mutations in D- and L-2-hydroxyglutarate dehydrogenases (D2HGDH and L2HGDH). If loss of IDH function is critical for tumourigenesis, we might expect some tumours to acquire somatic IDH3 mutations. Alternatively, if 2HG accumulation is critical, some tumours might acquire somatic D2HGDH or L2HGDH mutations. We therefore screened 47 glioblastoma samples looking for changes in these genes. Although IDH1 R132H was identified in 12% of samples, no mutations were identified in any of the other genes. This suggests that mutations in IDH3, D2HGDH and L2HGDH do not occur at an appreciable frequency in GBM. One explanation is simply that mono-allelic IDH1 and IDH2 mutations occur more frequently by chance than the bi-allelic mutations expected at IDH3, D2HGDH and L2HGDH. Alternatively, both loss of IDH function and 2HG accumulation might be required for tumourigenesis, and only IDH1 and IDH2 mutations have these dual effects

Age and Diet Affect Gene Expression Profiles in Canine Liver Tissue

BACKGROUND: The liver plays a central role in nutrient and xenobiotic metabolism, but its functionality declines with age. Senior dogs suffer from many of the chronic hepatic diseases as elderly humans, with age-related alterations in liver function influenced by diet. However, a large-scale molecular analysis of the liver tissue as affected by age and diet has not been reported in dogs. METHODOLOGY/PRINCIPAL FINDINGS: Liver tissue samples were collected from six senior (12-year old) and six young adult (1-year old) female beagles fed an animal protein-based diet (APB) or a plant protein-based diet (PPB) for 12 months. Total RNA in the liver tissue was extracted and hybridized to Affymetrix GeneChip® Canine Genome Arrays. Using a 2.0-fold cutoff and false discovery rate <0.10, our results indicated that expression of 234 genes was altered by age, while 137 genes were differentially expressed by diet. Based on functional classification, genes affected by age and/or diet were involved in cellular development, nutrient metabolism, and signal transduction. In general, gene expression suggested that senior dogs had an increased risk of the progression of liver disease and dysfunction, as observed in aged humans and rodents. In particular for aged liver, genes related to inflammation, oxidative stress, and glycolysis were up-regulated, whereas genes related to regeneration, xenobiotic metabolism, and cholesterol trafficking were down-regulated. Diet-associated changes in gene expression were more common in young adult dogs (33 genes) as compared to senior dogs (3 genes). CONCLUSION: Our results provide molecular insight pertaining to the aged canine liver and its predisposition to disease and abnormalities. Therefore, our data may aid in future research pertaining to age-associated alterations in hepatic function or identification of potential targets for nutritional management as a means to decrease incidence of age-dependent liver dysfunction

Gene Expression Profiles of Colonic Mucosa in Healthy Young Adult and Senior Dogs

Background: We have previously reported the effects of age and diet on nutrient digestibility, intestinal morphology, and large intestinal fermentation patterns in healthy young adult and senior dogs. However, a genome-wide molecular analysis of colonic mucosa as a function of age and diet has not yet been performed in dogs. Methodology/Principal Findings: Colonic mucosa samples were collected from six senior (12-year old) and six young adult (1-year old) female beagles fed one of two diets (animal protein-based vs. plant protein-based) for 12 months. Total RNA in colonic mucosa was extracted and hybridized to Affymetrix GeneChipH Canine Genome Arrays. Results indicated that the majority of gene expression changes were due to age (212 genes) rather than diet (66 genes). In particular, the colonic mucosa of senior dogs had increased expression of genes associated with cell proliferation, inflammation, stress response, and cellular metabolism, whereas the expression of genes associated with apoptosis and defensive mechanisms were decreased in senior vs. young adult dogs. No consistent diet-induced alterations in gene expression existed in both age groups, with the effects of diet being more pronounced in senior dogs than in young adult dogs. Conclusion: Our results provide molecular insight pertaining to the aged canine colon and its predisposition to dysfunction and disease. Therefore, our data may aid in future research pertaining to age-associated gastrointestinal physiologica

A fast and quantitative assay for developing zeolite-type hydrocarbon trap catalyst

A fast parallel method for determining the amount of toluene adsorbed over a variety of zeolites has been established. A three-step approach, including parallel adsorption of toluene onto the catalyst samples, the destructive or non-destructive extraction of trapped toluene by solvents including n-octane and 2,2,4,-trimethyl pentane (TMP) with NaOH and HF, respectively, and optical assay based on the characteristic absorption of toluene (ca. 261 nm of UV), has been performed sequentially to give a fast parallel and quantitative evaluation of the amount of toluene trapped over promising zeolite-type hydrocarbon trap catalysts. The results correlate well with those obtained by means of traditional, time-consuming techniques such as temperature-programmed desorption (TPD). (c) 2006 Elsevier Inc. All rights reserved.X1124sciescopu

Role of cobalt on gamma-Al2O3 based NOx storage catalyst

Co/Pt/Ba/gamma-Al2O3, Co/Ba/gamma-Al2O3, Pt/Ba/gamma-Al2O3, Co/Pt/gamma-Al2O3, Ba/gamma-Al2O3, Pt/gamma-Al2O3, and Co/gamma-Al2O3 type catalysts were prepared by a conventional impregnation method, and their NOx storage capacities were evaluated by colorimetric assay. Co-containing catalysts had a higher NO (x) storage capacity than that of Co-free counterparts. The role of each component, especially Co, for the catalysts prepared was investigated by using in-situ FTIR. The high NOx storage for Co-containing catalysts including Co/Ba/gamma-Al2O3 and Co/Pt/Ba/gamma-Al2O3 is mainly due to the formation of Co3O4 on the catalyst surface identified by XAFS.X1112sciescopu

Promising zeolite-type hydrocarbon trap catalyst by a knowledge-based combinatorial approach

Libraries consisting of more than 100 zeolite samples were prepared and examined for developing a promising HC trap catalyst. Parallel adsorptions of toluene onto the catalyst samples were conducted over a 10 x 10 array reactor under dry and wet conditions with or without a heating process three knowledge-based conditions for developing an automotive catalyst during the cold-start period. FAU and BEA type zeolites revealed a high performance of toluene adsorption under the dry condition. However, FAU type zeolite significantly decreased the amount of toluene adsorbed in the presence of water in the feed gas stream, mainly due to the hydrophobicity of the catalyst surface. Over Beta type zeolites, the toluene adsorbed was found to be considerably preserved, even after forced desorption temperature-ramping to the warm-up condition of an automotive engine. Li, K, or Ag ion-exchanged Beta zeolites seem to be particularly promising as an HC trap catalyst. (C) 2008 Elsevier Inc. All rights reserved.X112122sciescopu